IL_8P8N_056
3D structure
- PDB id
- 8P8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mouse RPL39 integrated into the yeast 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 8P8N|1|A|C|1391
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P8N_056 not in the Motif Atlas
- Homologous match to IL_5TBW_059
- Geometric discrepancy: 0.0646
- The information below is about IL_5TBW_059
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
8P8N|1|A|U|1388
8P8N|1|A|G|1389
8P8N|1|A|A|1390
8P8N|1|A|C|1391
8P8N|1|A|G|1392
8P8N|1|A|A|1393
8P8N|1|A|A|1394
8P8N|1|A|G|1395
*
8P8N|1|A|U|1415
8P8N|1|A|C|1416
8P8N|1|A|G|1417
8P8N|1|A|A|1418
8P8N|1|A|A|1419
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain LD
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LH
- 60S ribosomal protein L4-A
- Chain LJ
- 60S ribosomal protein L6-A
- Chain QO
- 60S ribosomal protein L17-A
- Chain QY
- 60S ribosomal protein L26-A
- Chain RE
- 60S ribosomal protein L32
Coloring options: