IL_8P8N_075

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

8P8N|1|A|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8N_075 not in the Motif Atlas

Geometric match to IL_5TBW_078

Geometric discrepancy: 0.0557

The information below is about IL_5TBW_078

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8P8N|1|A|C|1918
8P8N|1|A|G|1919
8P8N|1|A|U|1920
8P8N|1|A|A|1921
8P8N|1|A|A|1922
8P8N|1|A|C|1923
*
8P8N|1|A|G|1928
8P8N|1|A|G|1929
8P8N|1|A|A|1930
8P8N|1|A|U|1931
8P8N|1|A|A|1932
8P8N|1|A|A|1933
8P8N|1|A|G|1934

Current chains

Chain A

25S rRNA

Nearby chains

Chain RT

60S ribosomal protein L43-A