IL_8P8N_104

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

8P8N|1|A|A|2941, 8P8N|1|A|C|2942

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8N_104 not in the Motif Atlas

Homologous match to IL_5TBW_109

Geometric discrepancy: 0.0909

The information below is about IL_5TBW_109

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

8P8N|1|A|C|2881
8P8N|1|A|U|2882
*
8P8N|1|A|A|2940
8P8N|1|A|A|2941
8P8N|1|A|C|2942
8P8N|1|A|G|2943

Current chains

Chain A

25S rRNA

Nearby chains

Chain LG

60S ribosomal protein L3

Chain QV

60S ribosomal protein L23-A