IL_8P8N_131

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GUA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GUA,UAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8N_131 not in the Motif Atlas

Geometric match to IL_4YHW_001

Geometric discrepancy: 0.1646

The information below is about IL_4YHW_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8P8N|1|A|G|3345
8P8N|1|A|U|3346
8P8N|1|A|A|3347
*
8P8N|1|A|U|3358
8P8N|1|A|A|3359
8P8N|1|A|C|3360

Current chains

Chain A

25S rRNA

Nearby chains

Chain QU

60S ribosomal protein L22-A