IL_8P8U_018
3D structure
- PDB id
- 8P8U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.23 Å
Loop
- Sequence
- CAGACAGG*CAUAAUG
- Length
- 15 nucleotides
- Bulged bases
- 8P8U|1|A|A|440
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P8U_018 not in the Motif Atlas
- Homologous match to IL_5TBW_017
- Geometric discrepancy: 0.5813
- The information below is about IL_5TBW_017
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_33557.1
- Basepair signature
- cWW-tHH-R-L-R-L-L-R-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
8P8U|1|A|C|435
8P8U|1|A|A|436
8P8U|1|A|G|437
8P8U|1|A|A|438
8P8U|1|A|C|439
8P8U|1|A|A|440
8P8U|1|A|G|494
8P8U|1|A|G|495
*
8P8U|1|A|C|618
8P8U|1|A|A|619
8P8U|1|A|U|620
8P8U|1|A|A|621
8P8U|1|A|A|622
8P8U|1|A|U|623
8P8U|1|A|G|624
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain LJ
- 60S ribosomal protein L6-A
- Chain QO
- 60S ribosomal protein L17-A
- Chain RE
- 60S ribosomal protein L32
- Chain RF
- 60S ribosomal protein L33-A
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