IL_8P8U_022

3D structure

PDB id

8P8U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

UGC*GUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8U_022 not in the Motif Atlas

Geometric match to IL_5Y7M_007

Geometric discrepancy: 0.2613

The information below is about IL_5Y7M_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

8P8U|1|A|U|541
8P8U|1|A|G|542
8P8U|1|A|C|543
*
8P8U|1|A|G|548
8P8U|1|A|U|549
8P8U|1|A|A|550

Current chains

Chain A

25S rRNA

Nearby chains

Chain QS

60S ribosomal protein L20-A