IL_8P8U_063

3D structure

PDB id

8P8U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

GCCUGA*UGCAGGC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P8U|1|A|G|1561
8P8U|1|A|C|1562
8P8U|1|A|C|1563
8P8U|1|A|U|1564
8P8U|1|A|G|1565
8P8U|1|A|A|1566
*
8P8U|1|A|U|1572
8P8U|1|A|G|1573
8P8U|1|A|C|1574
8P8U|1|A|A|1575
8P8U|1|A|G|1576
8P8U|1|A|G|1577
8P8U|1|A|C|1578

Current chains

Chain A

25S rRNA

Nearby chains

Chain LD

5.8S ribosomal RNA; 5.8S rRNA

Chain LF

60S ribosomal protein L2-A

Chain LL

60S ribosomal protein L8-A

Chain QX

60S ribosomal protein L25