IL_8P8U_103

3D structure

PDB id

8P8U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8U_103 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.0942

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8P8U|1|A|U|2835
8P8U|1|A|C|2836
8P8U|1|A|A|2837
8P8U|1|A|A|2838
8P8U|1|A|G|2839
*
8P8U|1|A|C|2849
8P8U|1|A|G|2850
8P8U|1|A|A|2851
8P8U|1|A|C|2852
8P8U|1|A|A|2853

Current chains

Chain A

25S rRNA

Nearby chains

Chain LN

60S ribosomal protein L10

Chain RO

Ubiquitin-60S ribosomal protein L40