IL_8P8U_118

3D structure

PDB id

8P8U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

ACAC*GCGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8U_118 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.2373

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

8P8U|1|A|A|3163
8P8U|1|A|C|3164
8P8U|1|A|A|3165
8P8U|1|A|C|3166
*
8P8U|1|A|G|3284
8P8U|1|A|C|3285
8P8U|1|A|G|3286
8P8U|1|A|U|3287

Current chains

Chain A

25S rRNA

Nearby chains