IL_8P8U_119

3D structure

PDB id

8P8U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

AUAU*AUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8U_119 not in the Motif Atlas

Geometric match to IL_4WF9_110

Geometric discrepancy: 0.244

The information below is about IL_4WF9_110

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8P8U|1|A|A|3168
8P8U|1|A|U|3169
8P8U|1|A|A|3170
8P8U|1|A|U|3171
*
8P8U|1|A|A|3279
8P8U|1|A|U|3280
8P8U|1|A|U|3281
8P8U|1|A|U|3282

Current chains

Chain A

25S rRNA

Nearby chains

Chain RF

60S ribosomal protein L33-A