IL_8PEG_042

3D structure

PDB id

8PEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

8PEG|1|7|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PEG_042 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.2116

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

8PEG|1|7|G|1087
8PEG|1|7|A|1088
8PEG|1|7|A|1089
8PEG|1|7|A|1090
8PEG|1|7|G|1091
*
8PEG|1|7|C|1100
8PEG|1|7|U|1101
8PEG|1|7|C|1102

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L36

Chain k

50S ribosomal protein L11