IL_8PEG_047

3D structure

PDB id

8PEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PEG_047 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.1141

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8PEG|1|7|A|1262
8PEG|1|7|U|1263
8PEG|1|7|A|1264
8PEG|1|7|A|1265
8PEG|1|7|G|1266
8PEG|1|7|U|1267
8PEG|1|7|A|1268
8PEG|1|7|A|1269
*
8PEG|1|7|U|2011
8PEG|1|7|G|2012
8PEG|1|7|A|2013
8PEG|1|7|A|2014
8PEG|1|7|A|2015
8PEG|1|7|U|2016
8PEG|1|7|U|2017

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L32

Chain d

50S ribosomal protein L4

Chain v

50S ribosomal protein L22