IL_8PEG_066

3D structure

PDB id

8PEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8PEG|1|7|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PEG_066 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.0604

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8PEG|1|7|C|1686
8PEG|1|7|G|1687
8PEG|1|7|U|1688
8PEG|1|7|A|1689
8PEG|1|7|A|1690
8PEG|1|7|C|1691
*
8PEG|1|7|G|1696
8PEG|1|7|G|1697
8PEG|1|7|A|1698
8PEG|1|7|G|1699
8PEG|1|7|A|1700
8PEG|1|7|A|1701
8PEG|1|7|G|1702

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2