IL_8PEG_088

3D structure

PDB id

8PEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUG*CUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PEG_088 not in the Motif Atlas

Geometric match to IL_3NDB_001

Geometric discrepancy: 0.3406

The information below is about IL_3NDB_001

Detailed Annotation

Self complementary

Broad Annotation

Self complementary

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

8PEG|1|7|G|2107
8PEG|1|7|A|2108
8PEG|1|7|U|2109
8PEG|1|7|G|2110
*
8PEG|1|7|C|2179
8PEG|1|7|U|2180
8PEG|1|7|U|2181
8PEG|1|7|U|2182

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain X

Transfer RNA; tRNA

Chain a

Large ribosomal subunit protein uL1