IL_8PEG_138

3D structure

PDB id

8PEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PEG_138 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0957

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8PEG|1|A|U|409
8PEG|1|A|G|410
8PEG|1|A|A|411
8PEG|1|A|A|412
8PEG|1|A|G|413
8PEG|1|A|A|414
8PEG|1|A|A|415
8PEG|1|A|G|416
*
8PEG|1|A|U|427
8PEG|1|A|G|428
8PEG|1|A|U|429
8PEG|1|A|A|430
8PEG|1|A|A|431
8PEG|1|A|A|432
8PEG|1|A|G|433

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4