IL_8PEG_170

3D structure

PDB id

8PEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PEG_170 not in the Motif Atlas

Homologous match to IL_5J7L_053

Geometric discrepancy: 0.168

The information below is about IL_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

8PEG|1|A|C|1158
8PEG|1|A|U|1159
8PEG|1|A|G|1160
8PEG|1|A|C|1161
*
8PEG|1|A|G|1175
8PEG|1|A|A|1176
8PEG|1|A|G|1177
8PEG|1|A|G|1178
8PEG|1|A|A|1179
8PEG|1|A|A|1180
8PEG|1|A|G|1181

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain B

Small ribosomal subunit protein uS2

Chain I

Small ribosomal subunit protein uS9