IL_8PFR_011

3D structure

PDB id

8PFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39L integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GGC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PFR_011 not in the Motif Atlas

Geometric match to IL_1KFO_003

Geometric discrepancy: 0.1388

The information below is about IL_1KFO_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

8PFR|1|A|G|172
8PFR|1|A|G|173
8PFR|1|A|C|174
*
8PFR|1|A|G|244
8PFR|1|A|U|245
8PFR|1|A|U|246

Current chains

Chain A

25S rRNA

Nearby chains

Chain JT

60S ribosomal protein L13-A

Chain RH

60S ribosomal protein L35-A