IL_8PFR_044

3D structure

PDB id

8PFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39L integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GGU*ACC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGU,ACC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PFR_044 not in the Motif Atlas

Geometric match to IL_3R1C_012

Geometric discrepancy: 0.1851

The information below is about IL_3R1C_012

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8PFR|1|A|G|1012
8PFR|1|A|G|1013
8PFR|1|A|U|1014
*
8PFR|1|A|A|1036
8PFR|1|A|C|1037
8PFR|1|A|C|1038

Current chains

Chain A

25S rRNA

Nearby chains

Chain LN

60S ribosomal protein L10