IL_8PFR_077

3D structure

PDB id

8PFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39L integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

8PFR|1|A|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PFR_077 not in the Motif Atlas

Geometric match to IL_5TBW_078

Geometric discrepancy: 0.0587

The information below is about IL_5TBW_078

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8PFR|1|A|C|1918
8PFR|1|A|G|1919
8PFR|1|A|U|1920
8PFR|1|A|A|1921
8PFR|1|A|A|1922
8PFR|1|A|C|1923
*
8PFR|1|A|G|1928
8PFR|1|A|G|1929
8PFR|1|A|A|1930
8PFR|1|A|U|1931
8PFR|1|A|A|1932
8PFR|1|A|A|1933
8PFR|1|A|G|1934

Current chains

Chain A

25S rRNA

Nearby chains

Chain RT

60S ribosomal protein L43-A