IL_8PFR_094

3D structure

PDB id

8PFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39L integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

8PFR|1|A|G|2606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PFR_094 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.0745

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

8PFR|1|A|U|2423
8PFR|1|A|A|2424
8PFR|1|A|G|2425
*
8PFR|1|A|U|2604
8PFR|1|A|G|2605
8PFR|1|A|G|2606
8PFR|1|A|G|2607

Current chains

Chain A

25S rRNA

Nearby chains

Chain JV

60S ribosomal protein L15-A

Chain LF

60S ribosomal protein L2-A

Chain RQ

60S ribosomal protein L42-A