IL_8PFR_123

3D structure

PDB id

8PFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39L integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

8PFR|1|A|U|3198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PFR_123 not in the Motif Atlas

Geometric match to IL_5TBW_125

Geometric discrepancy: 0.1509

The information below is about IL_5TBW_125

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8PFR|1|A|C|3193
8PFR|1|A|C|3194
*
8PFR|1|A|G|3197
8PFR|1|A|U|3198
8PFR|1|A|G|3199

Current chains

Chain A

25S rRNA

Nearby chains

Chain JU

60S ribosomal protein L14-A

Chain JW

60S ribosomal protein L16-A

Chain LM

60S ribosomal protein L9-A