IL_8PFR_148

3D structure

PDB id

8PFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39L integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

UG*UUUGUA

Length

8 nucleotides

Bulged bases

8PFR|1|A|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PFR_148 not in the Motif Atlas

Geometric match to IL_5TBW_010

Geometric discrepancy: 0.2768

The information below is about IL_5TBW_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37379.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

8PFR|1|A|U|169
8PFR|1|A|G|170
*
8PFR|1|A|U|248
8PFR|1|A|U|249
8PFR|1|A|U|250
8PFR|1|A|G|251
8PFR|1|A|U|252
8PFR|1|A|A|253

Current chains

Chain A

25S rRNA

Nearby chains

Chain JT

60S ribosomal protein L13-A

Chain RH

60S ribosomal protein L35-A