IL_8PFR_149

3D structure

PDB id

8PFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39L integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CGUAU*AAG

Length

8 nucleotides

Bulged bases

8PFR|1|A|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PFR_149 not in the Motif Atlas

Homologous match to IL_8P9A_264

Geometric discrepancy: 0.4339

The information below is about IL_8P9A_264

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25463.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

8PFR|1|A|C|977
8PFR|1|A|G|978
8PFR|1|A|U|979
8PFR|1|A|A|980
8PFR|1|A|U|981
*
8PFR|1|A|A|1102
8PFR|1|A|A|1103
8PFR|1|A|G|1104

Current chains

Chain A

25S rRNA

Nearby chains

Chain LK

60S ribosomal protein L7-A

Chain QP

60S ribosomal protein L18-A

Chain RB

60S ribosomal protein L29