3D structure

PDB id
8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
cA4-bound Cami1 in complex with 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.67 Å

Loop

Sequence
UGAAGAAG*UGUAAAG
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8PHJ_019 not in the Motif Atlas
Homologous match to IL_5J7L_020
Geometric discrepancy: 0.1077
The information below is about IL_5J7L_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28026.3
Basepair signature
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
Number of instances in this motif group
2

Unit IDs

8PHJ|1|A|U|409
8PHJ|1|A|G|410
8PHJ|1|A|A|411
8PHJ|1|A|A|412
8PHJ|1|A|G|413
8PHJ|1|A|A|414
8PHJ|1|A|A|415
8PHJ|1|A|G|416
*
8PHJ|1|A|U|427
8PHJ|1|A|G|428
8PHJ|1|A|U|429
8PHJ|1|A|A|430
8PHJ|1|A|A|431
8PHJ|1|A|A|432
8PHJ|1|A|G|433

Current chains

Chain A
16S rRNA

Nearby chains

Chain D
Small ribosomal subunit protein uS4

Coloring options:


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