3D structure

PDB id
8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
cA4-bound Cami1 in complex with 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.67 Å

Loop

Sequence
GGAGG*CGUUAC
Length
11 nucleotides
Bulged bases
8PHJ|1|A|U|485
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8PHJ_021 not in the Motif Atlas
Geometric match to IL_5J7L_022
Geometric discrepancy: 0.0538
The information below is about IL_5J7L_022
Detailed Annotation
tSH-tHW-tWW
Broad Annotation
No text annotation
Motif group
IL_88269.4
Basepair signature
cWW-tWW-cSH-tWH-tHS-cWW
Number of instances in this motif group
3

Unit IDs

8PHJ|1|A|G|446
8PHJ|1|A|G|447
8PHJ|1|A|A|448
8PHJ|1|A|G|449
8PHJ|1|A|G|450
*
8PHJ|1|A|C|483
8PHJ|1|A|G|484
8PHJ|1|A|U|485
8PHJ|1|A|U|486
8PHJ|1|A|A|487
8PHJ|1|A|C|488

Current chains

Chain A
16S rRNA

Nearby chains

Chain D
Small ribosomal subunit protein uS4
Chain P
Small ribosomal subunit protein bS16

Coloring options:


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