3D structure

PDB id
8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
cA4-bound Cami1 in complex with 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.67 Å

Loop

Sequence
GA*UGAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8PHJ_030 not in the Motif Atlas
Homologous match to IL_4LFB_027
Geometric discrepancy: 0.0892
The information below is about IL_4LFB_027
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
Major groove platform
Motif group
IL_50694.7
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
27

Unit IDs

8PHJ|1|A|G|654
8PHJ|1|A|A|655
*
8PHJ|1|A|U|751
8PHJ|1|A|G|752
8PHJ|1|A|A|753
8PHJ|1|A|C|754

Current chains

Chain A
16S rRNA

Nearby chains

Chain H
Small ribosomal subunit protein uS8
Chain O
Small ribosomal subunit protein uS15

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3872 s