3D structure

PDB id
8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
cA4-bound Cami1 in complex with 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.67 Å

Loop

Sequence
CAAAC*GGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8PHJ_036 not in the Motif Atlas
Homologous match to IL_5J7L_037
Geometric discrepancy: 0.0752
The information below is about IL_5J7L_037
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

8PHJ|1|A|C|779
8PHJ|1|A|A|780
8PHJ|1|A|A|781
8PHJ|1|A|A|782
8PHJ|1|A|C|783
*
8PHJ|1|A|G|799
8PHJ|1|A|G|800
8PHJ|1|A|U|801
8PHJ|1|A|A|802
8PHJ|1|A|G|803

Current chains

Chain A
16S rRNA

Nearby chains

Chain K
Small ribosomal subunit protein uS11
Chain U
Small ribosomal subunit protein bS21
Chain a
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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