3D structure

PDB id
8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
cA4-bound Cami1 in complex with 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.67 Å

Loop

Sequence
GUG*CC
Length
5 nucleotides
Bulged bases
8PHJ|1|A|U|1049
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8PHJ_044 not in the Motif Atlas
Geometric match to IL_5J7L_046
Geometric discrepancy: 0.0929
The information below is about IL_5J7L_046
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
117

Unit IDs

8PHJ|1|A|G|1048
8PHJ|1|A|U|1049
8PHJ|1|A|G|1050
*
8PHJ|1|A|C|1208
8PHJ|1|A|C|1209

Current chains

Chain A
16S rRNA

Nearby chains

Chain N
Small ribosomal subunit protein uS14
Chain X
CRISPR-associated protein, APE2256 family

Coloring options:


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