IL_8PHJ_060

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PHJ_060 not in the Motif Atlas

Homologous match to IL_5J7L_062

Geometric discrepancy: 0.0811

The information below is about IL_5J7L_062

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8PHJ|1|A|G|1416
8PHJ|1|A|G|1417
8PHJ|1|A|A|1418
8PHJ|1|A|G|1419
*
8PHJ|1|A|U|1481
8PHJ|1|A|G|1482
8PHJ|1|A|A|1483
8PHJ|1|A|C|1484

Current chains

Chain A

16S rRNA

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA