IL_8PHJ_069
3D structure
- PDB id
- 8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cA4-bound Cami1 in complex with 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.67 Å
Loop
- Sequence
- GGAACUG*CUAAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PHJ_069 not in the Motif Atlas
- Homologous match to IL_5J7L_250
- Geometric discrepancy: 0.0637
- The information below is about IL_5J7L_250
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8PHJ|1|a|G|188
8PHJ|1|a|G|189
8PHJ|1|a|A|190
8PHJ|1|a|A|191
8PHJ|1|a|C|192
8PHJ|1|a|U|193
8PHJ|1|a|G|194
*
8PHJ|1|a|C|201
8PHJ|1|a|U|202
8PHJ|1|a|A|203
8PHJ|1|a|A|204
8PHJ|1|a|G|205
8PHJ|1|a|U|206
8PHJ|1|a|A|207
8PHJ|1|a|C|208
Current chains
- Chain a
- 23S rRNA (2862-MER)
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL35
- Chain k
- Large ribosomal subunit protein uL15
- Chain w
- Large ribosomal subunit protein bL28
Coloring options: