IL_8PHJ_072

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PHJ_072 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.4073

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8PHJ|1|a|C|274
8PHJ|1|a|C|275
8PHJ|1|a|U|276
8PHJ|1|a|G|277
8PHJ|1|a|A|278
8PHJ|1|a|A|279
8PHJ|1|a|U|280
8PHJ|1|a|C|281
*
8PHJ|1|a|G|359
8PHJ|1|a|U|360
8PHJ|1|a|G|361
8PHJ|1|a|A|362
8PHJ|1|a|G|363

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains