IL_8PHJ_098

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

8PHJ|1|a|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PHJ_098 not in the Motif Atlas

Homologous match to IL_7RQB_039

Geometric discrepancy: 0.0633

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

8PHJ|1|a|U|1018
8PHJ|1|a|U|1019
8PHJ|1|a|A|1020
8PHJ|1|a|A|1021
8PHJ|1|a|G|1022
8PHJ|1|a|U|1023
8PHJ|1|a|G|1024
*
8PHJ|1|a|C|1140
8PHJ|1|a|U|1141
8PHJ|1|a|A|1142
8PHJ|1|a|A|1143
8PHJ|1|a|A|1144

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain 3

Large ribosomal subunit protein bL36A

Chain i

Large ribosomal subunit protein uL13