IL_8PHJ_108

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PHJ_108 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.057

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8PHJ|1|a|A|1262
8PHJ|1|a|U|1263
8PHJ|1|a|A|1264
8PHJ|1|a|A|1265
8PHJ|1|a|G|1266
8PHJ|1|a|U|1267
8PHJ|1|a|A|1268
8PHJ|1|a|A|1269
*
8PHJ|1|a|U|2011
8PHJ|1|a|G|2012
8PHJ|1|a|A|2013
8PHJ|1|a|A|2014
8PHJ|1|a|A|2015
8PHJ|1|a|U|2016
8PHJ|1|a|U|2017

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain r

Large ribosomal subunit protein uL22

Chain z

Large ribosomal subunit protein bL32