IL_8PHJ_123

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PHJ_123 not in the Motif Atlas

Homologous match to IL_5J7L_304

Geometric discrepancy: 0.0599

The information below is about IL_5J7L_304

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.4

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8PHJ|1|a|G|1651
8PHJ|1|a|A|1652
8PHJ|1|a|G|1653
8PHJ|1|a|A|1654
8PHJ|1|a|A|1655
8PHJ|1|a|C|1656
*
8PHJ|1|a|G|2004
8PHJ|1|a|A|2005
8PHJ|1|a|C|2006

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain m

Large ribosomal subunit protein bL17