IL_8PHJ_134
3D structure
- PDB id
- 8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cA4-bound Cami1 in complex with 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.67 Å
Loop
- Sequence
- GAAG*CC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PHJ_134 not in the Motif Atlas
- Homologous match to IL_5J7L_316
- Geometric discrepancy: 0.1898
- The information below is about IL_5J7L_316
- Detailed Annotation
- Major groove minor groove platform; mini C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_68140.4
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 18
Unit IDs
8PHJ|1|a|G|1846
8PHJ|1|a|A|1847
8PHJ|1|a|A|1848
8PHJ|1|a|G|1849
*
8PHJ|1|a|C|1893
8PHJ|1|a|C|1894
Current chains
- Chain a
- 23S rRNA (2862-MER)
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: