IL_8PHJ_136

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PHJ_136 not in the Motif Atlas

Geometric match to IL_7RQB_076

Geometric discrepancy: 0.087

The information below is about IL_7RQB_076

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_59677.2

Basepair signature

cWW-cWW

Number of instances in this motif group

19

Unit IDs

8PHJ|1|a|G|1933
8PHJ|1|a|C|1934
*
8PHJ|1|a|G|1964
8PHJ|1|a|C|1965
8PHJ|1|a|A|1966
8PHJ|1|a|C|1967

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain 7

Transfer RNA; tRNA