IL_8PHJ_151

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

8PHJ|1|a|U|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PHJ_151 not in the Motif Atlas

Geometric match to IL_5LYS_008

Geometric discrepancy: 0.3922

The information below is about IL_5LYS_008

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8PHJ|1|a|U|2401
8PHJ|1|a|U|2402
8PHJ|1|a|C|2403
*
8PHJ|1|a|G|2414
8PHJ|1|a|G|2415

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain 0

Large ribosomal subunit protein bL33

Chain 2

Large ribosomal subunit protein bL35

Chain k

Large ribosomal subunit protein uL15