IL_8PHJ_153

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

C(PSU)GA*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PHJ_153 not in the Motif Atlas

Geometric match to IL_4OQU_001

Geometric discrepancy: 0.3197

The information below is about IL_4OQU_001

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_15698.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

8PHJ|1|a|C|2456
8PHJ|1|a|PSU|2457
8PHJ|1|a|G|2458
8PHJ|1|a|A|2459
*
8PHJ|1|a|U|2493
8PHJ|1|a|G|2494
8PHJ|1|a|G|2495

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain l

Large ribosomal subunit protein uL16