IL_8PHJ_182

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PHJ_182 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.0597

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8PHJ|1|a|G|1666
8PHJ|1|a|G|1667
8PHJ|1|a|A|1668
8PHJ|1|a|A|1669
8PHJ|1|a|C|1670
8PHJ|1|a|U|1671
8PHJ|1|a|A|1672
8PHJ|1|a|G|1673
8PHJ|1|a|G|1674
*
8PHJ|1|a|C|1990
8PHJ|1|a|U|1991
8PHJ|1|a|G|1992
8PHJ|1|a|U|1993
8PHJ|1|a|C|1994

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain j

Large ribosomal subunit protein uL14