3D structure

PDB id
8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
cA4-bound Cami1 in complex with 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.67 Å

Loop

Sequence
UGUAAG*UUGAG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8PHJ_190 not in the Motif Atlas
Homologous match to IL_5J7L_354
Geometric discrepancy: 0.076
The information below is about IL_5J7L_354
Detailed Annotation
tHS double platform
Broad Annotation
No text annotation
Motif group
IL_70411.2
Basepair signature
cWW-tSH-L-tHH-L-cWW
Number of instances in this motif group
7

Unit IDs

8PHJ|1|a|U|2847
8PHJ|1|a|G|2848
8PHJ|1|a|U|2849
8PHJ|1|a|A|2850
8PHJ|1|a|A|2851
8PHJ|1|a|G|2852
*
8PHJ|1|a|U|2865
8PHJ|1|a|U|2866
8PHJ|1|a|G|2867
8PHJ|1|a|A|2868
8PHJ|1|a|G|2869

Current chains

Chain a
23S rRNA (2862-MER)

Nearby chains

Chain m
Large ribosomal subunit protein bL17
Chain o
Large ribosomal subunit protein bL19

Coloring options:


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