IL_8PJ1_004
3D structure
- PDB id
- 8PJ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex in open codon scanning state (48S-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAAA*UGA(OMC)G
- Length
- 9 nucleotides
- Bulged bases
- 8PJ1|1|A|A|516
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PJ1_004 not in the Motif Atlas
- Geometric match to IL_4WF9_016
- Geometric discrepancy: 0.3365
- The information below is about IL_4WF9_016
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.2
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 43
Unit IDs
8PJ1|1|A|C|37
8PJ1|1|A|A|38
8PJ1|1|A|A|39
8PJ1|1|A|A|40
*
8PJ1|1|A|U|514
8PJ1|1|A|G|515
8PJ1|1|A|A|516
8PJ1|1|A|OMC|517
8PJ1|1|A|G|518
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain C
- 40S ribosomal protein S4, X isoform
- Chain D
- 40S ribosomal protein S9
- Chain T
- 40S ribosomal protein S24
Coloring options: