IL_8PJ1_014

3D structure

PDB id

8PJ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in open codon scanning state (48S-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCUACUU*AUGCCGAC

Length

15 nucleotides

Bulged bases

8PJ1|1|A|C|139, 8PJ1|1|A|C|142

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PJ1|1|A|G|130
8PJ1|1|A|C|139
8PJ1|1|A|U|140
8PJ1|1|A|A|141
8PJ1|1|A|C|142
8PJ1|1|A|U|143
8PJ1|1|A|U|144
*
8PJ1|1|A|A|175
8PJ1|1|A|U|176
8PJ1|1|A|G|177
8PJ1|1|A|C|178
8PJ1|1|A|C|179
8PJ1|1|A|G|180
8PJ1|1|A|A|181
8PJ1|1|A|C|182

Current chains

Chain A

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S6