IL_8PJ1_015

3D structure

PDB id

8PJ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in open codon scanning state (48S-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGGAUAAC*GCUAAUA(OMC)A

Length

17 nucleotides

Bulged bases

8PJ1|1|A|U|172

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PJ1|1|A|U|144
8PJ1|1|A|G|145
8PJ1|1|A|G|146
8PJ1|1|A|A|147
8PJ1|1|A|U|148
8PJ1|1|A|A|149
8PJ1|1|A|A|150
8PJ1|1|A|C|151
*
8PJ1|1|A|G|167
8PJ1|1|A|C|168
8PJ1|1|A|U|169
8PJ1|1|A|A|170
8PJ1|1|A|A|171
8PJ1|1|A|U|172
8PJ1|1|A|A|173
8PJ1|1|A|OMC|174
8PJ1|1|A|A|175

Current chains

Chain A

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S6

Chain T

40S ribosomal protein S24