IL_8PJ1_034

3D structure

PDB id

8PJ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in open codon scanning state (48S-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ1_034 not in the Motif Atlas

Geometric match to IL_5UNE_005

Geometric discrepancy: 0.2823

The information below is about IL_5UNE_005

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_76776.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8PJ1|1|A|U|566
8PJ1|1|A|C|567
8PJ1|1|A|C|568
8PJ1|1|A|A|569
*
8PJ1|1|A|U|581
8PJ1|1|A|U|582
8PJ1|1|A|A|583
8PJ1|1|A|A|584

Current chains

Chain A

18S rRNA

Nearby chains

Chain D

40S ribosomal protein S9

Chain T

40S ribosomal protein S24