IL_8PJ1_036

3D structure

PDB id

8PJ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in open codon scanning state (48S-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

8PJ1|1|A|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ1_036 not in the Motif Atlas

Geometric match to IL_4V88_407

Geometric discrepancy: 0.2828

The information below is about IL_4V88_407

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8PJ1|1|A|G|606
8PJ1|1|A|U|607
8PJ1|1|A|C|608
*
8PJ1|1|A|G|635
8PJ1|1|A|C|636

Current chains

Chain A

18S rRNA

Nearby chains

Chain 7

mRNA

Chain D

40S ribosomal protein S9

Chain F

40S ribosomal protein S30

Chain Z

40S ribosomal protein S3