IL_8PJ1_053

3D structure

PDB id

8PJ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in open codon scanning state (48S-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

8PJ1|1|A|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PJ1_053 not in the Motif Atlas

Homologous match to IL_8C3A_436

Geometric discrepancy: 0.1222

The information below is about IL_8C3A_436

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

8PJ1|1|A|G|924
8PJ1|1|A|G|925
8PJ1|1|A|A|926
8PJ1|1|A|C|927
*
8PJ1|1|A|G|1014
8PJ1|1|A|U|1015
8PJ1|1|A|U|1016
8PJ1|1|A|U|1017
8PJ1|1|A|U|1018

Current chains

Chain A

18S rRNA

Nearby chains

Chain H

40S ribosomal protein S27

Chain I

40S ribosomal protein S13

Chain y

Eukaryotic translation initiation factor 3 subunit C