IL_8PJ1_060
3D structure
- PDB id
- 8PJ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex in open codon scanning state (48S-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 8PJ1|1|A|C|1153, 8PJ1|1|A|U|1155, 8PJ1|1|A|G|1157
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PJ1_060 not in the Motif Atlas
- Homologous match to IL_8C3A_443
- Geometric discrepancy: 0.1184
- The information below is about IL_8C3A_443
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_47729.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8PJ1|1|A|C|1091
8PJ1|1|A|G|1092
8PJ1|1|A|A|1093
*
8PJ1|1|A|U|1152
8PJ1|1|A|C|1153
8PJ1|1|A|U|1154
8PJ1|1|A|U|1155
8PJ1|1|A|U|1156
8PJ1|1|A|G|1157
8PJ1|1|A|G|1158
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain B
- 40S ribosomal protein S11
- Chain E
- 40S ribosomal protein S23
- Chain H
- 40S ribosomal protein S27
- Chain I
- 40S ribosomal protein S13
- Chain J
- 40S ribosomal protein S15a
- Chain K
- 40S ribosomal protein S21
- Chain L
- 40S ribosomal protein S2
Coloring options: