IL_8PJ1_070
3D structure
- PDB id
- 8PJ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex in open codon scanning state (48S-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GCC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PJ1_070 not in the Motif Atlas
- Geometric match to IL_5MWI_006
- Geometric discrepancy: 0.1295
- The information below is about IL_5MWI_006
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 259
Unit IDs
8PJ1|1|A|G|1270
8PJ1|1|A|C|1271
8PJ1|1|A|C|1272
*
8PJ1|1|A|G|1510
8PJ1|1|A|U|1511
8PJ1|1|A|C|1512
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain a
- 40S ribosomal protein S10
- Chain b
- 40S ribosomal protein S15
- Chain i
- 40S ribosomal protein S29
- Chain k
- Ubiquitin
Coloring options: