IL_8PJ1_072

3D structure

PDB id

8PJ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in open codon scanning state (48S-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUUG*CUCGAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PJ1|1|A|A|1287
8PJ1|1|A|U|1288
8PJ1|1|A|U|1289
8PJ1|1|A|G|1290
*
8PJ1|1|A|C|1309
8PJ1|1|A|U|1310
8PJ1|1|A|C|1311
8PJ1|1|A|G|1312
8PJ1|1|A|A|1313
8PJ1|1|A|U|1314

Current chains

Chain A

18S rRNA

Nearby chains

Chain a

40S ribosomal protein S10

Chain k

Ubiquitin

Chain m

40S ribosomal protein S12