IL_8PJ1_077
3D structure
- PDB id
- 8PJ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex in open codon scanning state (48S-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CG*CAG
- Length
- 5 nucleotides
- Bulged bases
- 8PJ1|1|A|A|1489
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PJ1_077 not in the Motif Atlas
- Homologous match to IL_8C3A_458
- Geometric discrepancy: 0.1537
- The information below is about IL_8C3A_458
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 112
Unit IDs
8PJ1|1|A|C|1337
8PJ1|1|A|G|1338
*
8PJ1|1|A|C|1488
8PJ1|1|A|A|1489
8PJ1|1|A|G|1490
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain 7
- mRNA
- Chain L
- 40S ribosomal protein S2
- Chain Y
- 40S ribosomal protein S16
- Chain Z
- 40S ribosomal protein S3
- Chain h
- 40S ribosomal protein S20
- Chain i
- 40S ribosomal protein S29
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